Models and algorithms for metabolic networks: elementary modes and precursor sets
Vicente Acuña
Algorithme et structure de données [cs.DS]. Université Claude Bernard - Lyon I, 2010. Français.
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Models and algorithms for metabolic networks: elementary modes and precursor sets
Vicente Acuña
incollection , 2010, --, pp.173-179
Article dans une revue
hal-00698452v1
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Coding with variable block maps
Gilles Didier
,
Vicente Acuña
,
Alejandro Maass
Article dans une revue
hal-01614117v1
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Modeling parsimonious putative regulatory networks: complexity and heuristic approach
Vicente Acuña
,
Andrés Aravena
,
Alejandro Maass
,
Anne Siegel
15th conference in Verification, Model Checking, and Abstract Interpretation , 2014, San Diego, United States. pp.322-336,
⟨10.1007/978-3-642-54013-4_18⟩
Communication dans un congrès
hal-00926477v1
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A note on the complexity of finding and enumerating elementary modes.
Vicente Acuña
,
Alberto Marchetti-Spaccamela
,
Marie-France Sagot
,
Leen Stougie
Article dans une revue
hal-00845385v1
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Modes and Cuts in Metabolic Networks:Complexity and Algorithms
Vicente Acuna
,
F. Chierichetti
,
Vincent Lacroix
,
A. Marchetti-Spaccamela
,
M.-F. Sagot
,
et al.
BioSystems , 2008, 95 - n°1, pp.51-60
Article dans une revue
hal-00428239v1
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Deciphering transcriptional regulations coordinating the response to environmental changes
Vicente Acuña
,
Andrés Aravena
,
Carito Guziolowski
,
Damien Eveillard
,
Anne Siegel
,
et al.
Article dans une revue
hal-01260866v1
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Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.
Vicente Acuña
,
Paulo Vieira Milreu
,
Ludovic Cottret
,
Alberto Marchetti-Spaccamela
,
Leen Stougie
,
et al.
Article dans une revue
hal-00751715v1
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Unveiling abundance-dependent metabolic phenotypes of microbial communities
Natalia E Jiménez
,
Vicente Acuña
,
María Paz Cortés
,
Damien Eveillard
,
Alejandro Eduardo Maass
Article dans une revue
hal-04198586v1
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A family of tree-based generators for bubbles in directed graphs
Vicente Acuña
,
Leandro Ishi Soares de Lima
,
Giuseppe F Italiano
,
Luca Pepè Sciarria
,
Marie-France Sagot
,
et al.
Article dans une revue
hal-03504540v1
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Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata.
Ludovic Cottret
,
Paulo Vieira Milreu
,
Vicente Acuña
,
Alberto Marchetti-Spaccamela
,
Leen Stougie
,
et al.
Article dans une revue
hal-00690650v1
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A Family of Tree-Based Generators for Bubbles in Directed Graphs
Vicente Acuña
,
Leandro Ishi Soares de Lima
,
Giuseppe F Italiano
,
Luca Pepè Sciarria
,
Marie-France Sagot
,
et al.
Communication dans un congrès
hal-02971154v1
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Enumerating precursor sets of target metabolites in a metabolic network
L. Cottret
,
P.V. Milreu
,
Vicente Acuna
,
A. Marchetti-Spaccamela
,
F. Viduani Martinez
,
et al.
WABI 2008 - 8th International Workshop on Algorithms in Bioinformatics , Sep 2008, Karlsruhe, Germany. pp.233-244
Communication dans un congrès
hal-00391292v1
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On Bubble Generators in Directed Graphs
Vicente Acuna
,
Roberto Grossi
,
Giuseppe F Italiano
,
Leandro Lima
,
Romeo Rizzi
,
et al.
WG 2017 - 43rd International Workshop on Graph-Theoretic Concepts in Computer Science , Jun 2017, Eindhoven, Netherlands. pp.18-31,
⟨10.1007/978-3-319-68705-6_2⟩
Communication dans un congrès
hal-01647516v1
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Enumeration of minimal stoichiometric precursor sets in metabolic networks
Ricardo Andrade
,
Martin Wannagat
,
Cecilia C. Klein
,
Vicente Acuña
,
Alberto Marchetti-Spaccamela
,
et al.
Article dans une revue
hal-01368653v1
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Minimum ratio cover of matrix columns by extreme rays of its induced cone
Alexandre da Silva Freire
,
Vicente Acuña
,
Pierluigi Crescenzi
,
Carlos Eduardo Ferreira
,
Vincent Lacroix
,
et al.
Proceedings of the Second international Symposium on Combinatorial Optimization (ISCO) , Apr 2012, Athens, Greece. pp.165--177,
⟨10.1007/978-3-642-32147-4_16⟩
Communication dans un congrès
hal-00763453v1
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On Bubble Generators in Directed Graphs
Vicente Acuña
,
Roberto Grossi
,
Giuseppe F. Italiano
,
Leandro Lima
,
Romeo Rizzi
,
et al.
Article dans une revue
hal-02284946v1
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Telling Stories
Vicente Acuña
,
Etienne Birmele
,
Ludovic Cottret
,
Pierluigi Crescenzi
,
Fabien Jourdan
,
et al.
Communication dans un congrès
hal-00748788v1
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms
Paulo Vieira Milreu
,
Vicente Acuña
,
Etienne E. Birmelé
,
Pierluigi Crescenzi
,
Alberto Marchetti-Spaccamela
,
et al.
Communication dans un congrès
hal-00751339v1
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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets
Vicente Acuña
,
Etienne Birmelé
,
Ludovic Cottret
,
Pierluigi Crescenzi
,
Fabien Jourdan
,
et al.
Article dans une revue
hal-00764025v1
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Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure
Paulo Vieira Milreu
,
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Vicente Acuña
,
Etienne E. Birmelé
,
et al.
Article dans une revue
hal-00922567v1
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