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Numerical solution of the Optimal Transportation problem using the Monge–Ampère equation

Jean-David Benamou , Brittany D. Froese , Adam M. Oberman
Journal of Computational Physics, 2014, 260 (1), pp.107-126. ⟨10.1016/j.jcp.2013.12.015⟩
Article dans une revue hal-01115626v1

Proceedings of the Workshop on Parallel and Distributed Algorithms Bonas, France

Jean-Marc Jézéquel , M. Adam , Philippe Ingels , Claude Jard , Michel Raynal
Experimentation on parallel machines is helpful to analyse distributed algorithms, Sep 1988, North Holland, Netherlands
Communication dans un congrès hal-00765038v1

Solving Fredholm Integral Equations of the First Kind via Wasserstein Gradient Flows

Francesca R. Crucinio , Valentin de Bortoli , Arnaud Doucet , Adam M. Johansen
2023
Pré-publication, Document de travail hal-03945462v1
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Exploring the Extremes: Characterizing a New Population of Old and Cold Brown Dwarfs

Aaron M. Meisner , Sandy K. Leggett , Sarah E. Logsdon , Adam C. Schneider , Pascal Tremblin , et al.
The Astronomical Journal, 2023, 166 (2), ⟨10.3847/1538-3881/acdb68⟩
Article dans une revue hal-04190876v1

Dynamics of Transmon Ionization

Ross Shillito , Alexandru Petrescu , Joachim Cohen , Jackson Beall , Markus Hauru , et al.
Physical Review Applied, 2022, 18 (3), pp.034031. ⟨10.1103/PhysRevApplied.18.034031⟩
Article dans une revue hal-03630643v1

Impact of Hepatitis C cure on risk of mortality and morbidity in people with HIV after ART initiation

Mathieu Chalouni , Adam Trickey , Suzanne M. Ingle , Maria Antonia Sepuvelda , Juan Gonzalez , et al.
AIDS. Official journal of the international AIDS Society, 2023, ⟨10.1097/qad.0000000000003594⟩
Article dans une revue hal-04139288v1
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Acquired resistance to PD-L1 inhibition is associated with an enhanced type I IFN-stimulated secretory program in tumor cells

Yuhao Shi , Melissa Dolan , Michalis Mastri , Amber Mckenery , James W Hill , et al.
2023
Pré-publication, Document de travail hal-04387866v1
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All-cause hospitalisation among people living with HIV according to gender, mode of HIV acquisition, ethnicity, and geographical origin in Europe and North America: findings from the ART-CC cohort collaboration

Sophia M Rein , Fiona C Lampe , Suzanne M Ingle , Jonathan a C Sterne , Adam Trickey , et al.
Lancet Public Health, 2023, 8 (10), pp.776-787. ⟨10.1016/s2468-2667(23)00178-0⟩
Article dans une revue hal-04327414v1

Predictive modeling of the virtual Hemi-Fontan operation for second stage single ventricle palliation: Two patient-specific cases.

Ethan Kung , Alessia Baretta , Catriona Baker , Grégory Arbia , Giovanni Biglino , et al.
Journal of Biomechanics, 2013, 46 (2), pp.423-429. ⟨10.1016/j.jbiomech.2012.10.023⟩
Article dans une revue hal-00765797v1
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Estimation of Improvements in Mortality in Spectrum Among Adults With HIV Receiving Antiretroviral Therapy in High-Income Countries

Adam Trickey , Robert Glaubius , Nikos Pantazis , Robert Zangerle , Linda Wittkop , et al.
Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2024, 95 (1S), pp.e89-e96. ⟨10.1097/qai.0000000000003326⟩
Article dans une revue hal-04467807v1
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Integrase strand-transfer inhibitor use and cardiovascular events in adults with HIV: an emulation of target trials in the HIV-CAUSAL Collaboration and the Antiretroviral Therapy Cohort Collaboration

Sophia M. Rein , Sara Lodi , Roger W. Logan , Giota Touloumi , Anastasia C. Antoniadou , et al.
The Lancet HIV, 2023, 10 (11), pp.e723-e732. ⟨10.1016/S2352-3018(23)00233-3⟩
Article dans une revue hal-04294680v1
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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

Marcel Smid , F. Germán Rodríguez-González , Anieta M. Sieuwerts , Roberto Salgado , Wendy J. C. Prager-van Der Smissen , et al.
Nature Communications, 2016, 7, ⟨10.1038/ncomms12910⟩
Article dans une revue hal-01388445v1
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Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV

Talia M Nir , Jean-Paul Fouche , Jintanat Ananworanich , Beau M Ances , Jasmina Boban , et al.
JAMA Network Open, 2021, 4 (1), pp.e2031190. ⟨10.1001/jamanetworkopen.2020.31190⟩
Article dans une revue hal-03241929v1
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The circular RNome of primary breast cancer

Marcel Smid , Saskia M Wilting , Katharina Uhr , F. Germán Rodríguez-González , Vanja de Weerd , et al.
Genome Research, 2019, 29 (3), pp.356-366. ⟨10.1101/gr.238121.118⟩
Article dans une revue hal-02338656v1
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Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Sarah Djebali , Julien Lagarde , Philipp Kapranov , Vincent Lacroix , Christelle Borel , et al.
PLoS ONE, 2012, 7, pp.1-22
Article dans une revue hal-00698428v1
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Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study

Monika Brüggemann , Michaela Kotrova , Henrik Knecht , Jack Bartram , Myriam Boudjogrha , et al.
Article dans une revue hal-02169053v1
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Determinants of Restoration of CD4 and CD8 Cell Counts and Their Ratio in HIV-1-Positive Individuals With Sustained Virological Suppression on Antiretroviral Therapy

Luuk Gras , Margaret May , Lars Peter Ryder , Adam Trickey , Marie Helleberg , et al.
Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2019, 80 (3), pp.292-300. ⟨10.1097/QAI.0000000000001913⟩
Article dans une revue hal-03161868v2
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Computational pan-genomics: status, promises and challenges

Tobias Marschall , Manja Marz , Thomas Abeel , Louis Dijkstra , Bas E. Dutilh , et al.
Briefings in Bioinformatics, 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Article dans une revue hal-01390478v1

Post‐HCV cure self‐reported changes in physical activity, eating behaviours, and fatigue in people living with HIV (ANRS CO13 HEPAVIH)

Fabienne Marcellin , Vincent Di Beo , Laure Esterle , Sophie Abgrall , Gilles Pialoux , et al.
Journal of Viral Hepatitis, 2021, 28 (11), pp.1665-1667. ⟨10.1111/jvh.13605⟩
Article dans une revue hal-03534057v1

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Dent A. Earl , Keith Bradnam , John St. John , Aaron Darling , Dawei Lin , et al.
Genome Research, 2011, ⟨10.1101/gr.126599.111⟩
Article dans une revue inria-00637571v1
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Landscape of somatic mutations in 560 breast cancer whole-genome sequences

Serena Nik-Zainal , Helen R. Davies , Johan Staaf , Manasa Ramakrishna , Dominik Glodzik , et al.
Nature, 2016, 534 (7605), pp.47 - 54. ⟨10.1038/nature17676⟩
Article dans une revue hal-01388447v1

Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in investigating mechanisms of hepatotoxicity, cell signaling and ADME.

Patricio Godoy , Nicola J Hewitt , Ute Albrecht , Melvin E Andersen , Nariman Ansari , et al.
Archives of Toxicology, 2013, 87 (8), pp.1315-530. ⟨10.1007/s00204-013-1078-5⟩
Article dans une revue hal-00939009v1
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The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Russell Poldrack , Christopher Markiewicz , Stefan Appelhoff , Yoni Ashar , Tibor Auer , et al.
Imaging Neuroscience, 2024, 2, pp.1-19. ⟨10.1162/imag_a_00103⟩
Article dans une revue hal-04346097v1
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Operational Research: methods and applications

Fotios Petropoulos , Gilbert Laporte , Emel Aktas , Sibel A Alumur , Claudia Archetti , et al.
Journal of the Operational Research Society, 2023, pp.1-195. ⟨10.1080/01605682.2023.2253852⟩
Article dans une revue hal-04399101v1
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Blind prediction of homo‐ and hetero‐ protein complexes: The CASP13‐CAPRI experiment

Marc Lensink , Guillaume Brysbaert , Nurul Nadzirin , Sameer Velankar , Raphaël A.G. Chaleil , et al.
Proteins - Structure, Function and Bioinformatics, 2019, 87 (12), pp.1200-1221. ⟨10.1002/prot.25838⟩
Article dans une revue hal-02320974v1
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Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment

Andriy Kryshtafovych , John Moult , Wendy M Billings , Dennis Della Corte , Krzysztof Fidelis , et al.
Proteins - Structure, Function and Bioinformatics, 2021, 89 (12), pp.1987-1996. ⟨10.1002/prot.26231⟩
Article dans une revue hal-03454382v1

DNA methylation networks underlying mammalian traits

Amin Haghani , Caesar Li , Todd Robeck , Joshua Zhang , Ake Lu , et al.
Science, 2023, 381 (6658), ⟨10.1126/science.abq5693⟩
Article dans une revue hal-04187844v1

Universal Dependencies 2.2

Joakim Nivre , Mitchell Abrams , Željko Agić , Lars Ahrenberg , Lene Antonsen , et al.
2018
Autre publication scientifique hal-01930733v1
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BLOOM: A 176B-Parameter Open-Access Multilingual Language Model

Teven Le Scao , Angela Fan , Christopher Akiki , Ellie Pavlick , Suzana Ilić , et al.
2023
Pré-publication, Document de travail hal-03850124v1