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Automated segmentation of thick confocal microscopy 3D images for the measurement of white matter volumes in zebrafish brains

Sylvain Lempereur , Arnim Jenett , Elodie Machado , Ignacio Arganda-Carreras , Matthieu Simion , et al.
Mathematical Morphology - Theory and Applications, 2020, 4 (1), pp.31-45. ⟨10.1515/mathm-2020-0100⟩
Article dans une revue hal-03144939v1

ZeBraInspector, a platform for the automated segmentation and analysis of body and brain volumes in whole 5 days post-fertilization zebrafish following simultaneous visualization with identical orientations

Sylvain Lempereur , Elodie Machado , Fabrice Licata , Matthieu Simion , Lilian Buzer , et al.
Developmental Biology, 2022, 490, pp.86-99. ⟨10.1016/j.ydbio.2022.07.004⟩
Article dans une revue hal-03776235v1
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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

Emmanuel Faure , Thierry Savy , Barbara Rizzi , Camilo Melani , Olga Stašová , et al.
Nature Communications, 2016, 7, pp.8674. ⟨10.1038/ncomms9674⟩
Article dans une revue hal-02086959v1