Recherche - INRIA - Institut National de Recherche en Informatique et en Automatique Accéder directement au contenu

Filtrer vos résultats

17 résultats
Page :
triés par
Image document

DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

 Wandrille Duchemin , Yoann Anselmetti , Murray Patterson , Yann Ponty , Sèverine Bérard , et al.
Genome Biology and Evolution, 2017, 9 (5), pp.1312-1319. ⟨10.1093/gbe/evx069⟩
Article dans une revue hal-01503766v2
Image document

Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame

 Jules Deforges , Sylvain de Breyne , Melissa Ameur , Nathalie Ulryck , Nathalie Chamond , et al.
Nucleic Acids Research, 2017, 45 (12), pp.7382--7400. ⟨10.1093/nar/gkx303⟩
Article dans une revue hal-01505282v1
Image document

Combinatorial RNA Design: Designability and Structure-Approximating Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models

 Jozef Haleš , Alice Héliou , Ján Maňuch , Yann Ponty , Ladislav Stacho
Algorithmica, 2017, 79 (3), pp.835--856. ⟨10.1007/s00453-016-0196-x⟩
Article dans une revue hal-01285499v2
Image document

Counting, generating, analyzing and sampling tree alignments

 Cedric Chauve , Julien Courtiel , Yann Ponty
International Journal of Foundations of Computer Science, 2018, 29 (5), pp.741--767
Article dans une revue hal-01500116v1
Image document

Exponentially few RNA structures are designable

 Hua-Ting Yao , Cedric Chauve , Mireille Regnier , Yann Ponty
ACM-BCB 2019 - 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, Sep 2019, Niagara-Falls, United States. pp.289-298, ⟨10.1145/3307339.3342163⟩
Communication dans un congrès hal-02141853v2
Image document

Combinatorial RNA Design: Designability and Structure-Approximating Algorithm

 Jozef Haleš , Ján Maňuch , Yann Ponty , Ladislav Stacho
CPM - 26th Annual Symposium on Combinatorial Pattern Matching, Jun 2015, Ischia Island, Italy
Communication dans un congrès hal-01115349v2

Absent words in a sliding window with applications

 Maxime Crochemore , Alice Héliou , Gregory Kucherov , Laurent Mouchard , Solon Pissis , et al.
Information and Computation, 2019, pp.104461. ⟨10.1016/j.ic.2019.104461⟩
Article dans une revue hal-02414839v1
Image document

Design of RNAs: comparing programs for inverse RNA folding.

 Alexander Churkin , Matan Drory Retwitzer , Vladimir Reinharz , Yann Ponty , Jérôme Waldispühl , et al.
Briefings in Bioinformatics, 2018, 19 (2), pp.350--358. ⟨10.1093/bib/bbw120⟩
Article dans une revue hal-01392958v1
Image document

IPANEMAP: Integrative Probing Analysis of Nucleic Acids Empowered by Multiple Accessibility Profiles

 Afaf Saaidi , Delphine M Allouche , Mireille Regnier , Bruno Sargueil , Yann Ponty
Nucleic Acids Research, 2020, 48 (15), pp.8276--8289. ⟨10.1093/nar/gkaa607⟩
Article dans une revue hal-02889041v3
Image document

Efficient approximations of RNA kinetics landscape using non-redundant sampling

 Juraj Michálik , Hélène Touzet , Yann Ponty
ISMB/ECCB - 25th Annual international conference on Intelligent Systems for Molecular Biology/16th European Conference on Computational Biology - 2017, Jul 2017, Prague, Czech Republic. pp.i283 - i292, ⟨10.1093/bioinformatics/btx269⟩
Communication dans un congrès hal-01500115v1

Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction

 Rick Gelhausen , Sebastian Will , Ivo Hofacker , Rolf Backofen , Martin Raden
Proceedings Of The 12th International Joint Conference On Biomedical Engineering Systems And Technologies (Biostec 2019), 2019, 3, pp.131-140. ⟨10.5220/0007689701310140⟩
Article dans une revue hal-04477395v1
Image document

Constructing Antidictionaries of Long Texts in Output-Sensitive Space

 Lorraine a K Ayad , Golnaz Badkobeh , Gabriele Fici , Alice Héliou , Solon P Pissis
Theory of Computing Systems, 2021, 65 (5), pp.777-797. ⟨10.1007/s00224-020-10018-5⟩
Article dans une revue hal-03498331v1

An EM algorithm for mapping short reads in multiple RNA structure probing experiments

 Afaf Saaidi , Yann Ponty , Mathieu Blanchette , Mireille Regnier , Bruno Sargueil
Matbio2017, King's College London Sep 2017, London, United Kingdom
Communication dans un congrès hal-01590528v1
Image document

Color Coding for the Fragment-Based Docking, Design and Equilibrium Statistics of Protein-Binding ssRNAs

 Taher Yacoub , Roy González-Alemán , Fabrice Leclerc , Isaure Chauvot de Beauchêne , Yann Ponty
RECOMB 2024 - 28th International Conference of Research in Computational Molecular Biology, Apr 2024, Boston, United States
Communication dans un congrès hal-03816423v3
Image document

IntaRNAhelix - composing RNA–RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction

 Rick Gelhausen , Sebastian Will , Ivo L. Hofacker , Rolf Backofen , Martin Raden
Journal of Bioinformatics and Computational Biology, 2019, 17 (05), pp.1940009. ⟨10.1142/S0219720019400092⟩
Article dans une revue hal-03131213v1

Hedging under uncertainty: regret minimization meets exponentially fast convergence

 Johanne Cohen , Amélie Héliou , Panayotis Mertikopoulos
Symposium on Algorithmic Game Theory (SAGT) 2017, Sep 2017, L'Aquila, Italy. ⟨10.1007/978-3-319-66700-3_20⟩
Communication dans un congrès hal-01382290v1

Learning with bandit feedback in potential games

 Johanne Cohen , Amélie Héliou , Panayotis Mertikopoulos
NIPS '17: Proceedings of the 31st International Conference on Neural Information Processing Systems, Dec 2017, Long Beach, CA, United States
Communication dans un congrès hal-01643352v1
Page :