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228 résultats
Static analysis of Biological Regulatory Networks dynamics using abstract interpretationMathematical Structures in Computer Science, 2012, 22 (04), pp 651-685. ⟨10.1017/S0960129511000739⟩
Article dans une revue
hal-00714481v1
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A meta-approach for improving the prediction and the functional annotation of ortholog groupsBMC Genomics, 2014, ⟨10.1186/1471-2164-15-S6-S16⟩
Article dans une revue
inserm-01229454v1
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Constant time estimation of ranking statistics by analytic combinatoricsStatistical Methods for Post-Genomic Data, Jan 2011, Paris, France. no page numbering
Communication dans un congrès
hal-00567091v1
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An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressureRECOMB - 15th Annual International Conference on Research in Computational Molecular Biology - 2011, Mar 2011, Vancouver, Canada. pp.501-515, ⟨10.1007/978-3-642-20036-6_45⟩
Communication dans un congrès
hal-00546847v1
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A global sampling approach to designing and reengineering RNA secondary structures.Nucleic Acids Research, 2012, 40 (20), pp.10041-10052. ⟨10.1093/nar/gks768⟩
Article dans une revue
hal-00733924v1
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Visualizing 2D & 3D Structures of RNAVIZBI - 3rd international meeting on Visualizing Biological Data - 2012, Jim, Procter (U-Dundee, Scotland) and Sean O'Donoghue (CMIS, Australia), Mar 2012, Heidelberg, Germany
Communication dans un congrès
hal-00723351v1
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The weighted words collectorAOFA - 23rd International Meeting on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms - 2012, Nicolas, Broutin (INRIA, France) and Luc, Devroye (McGill, Canada), Jun 2012, Montreal, Canada. pp.243--264, ⟨10.46298/dmtcs.2998⟩
Communication dans un congrès
hal-00666399v2
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Extraction de motifs dans les graphes de workflows scientifiquesBio-informatique [q-bio.QM]. 2014
Mémoire d'étudiant
dumas-01088813v1
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Multi-dimensional Boltzmann Sampling of Languages21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), Jun 2010, Vienna, Austria. pp.49-64, ⟨10.46298/dmtcs.2793⟩
Communication dans un congrès
hal-00450763v4
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A new dichotomic algorithm for the uniform random generation of words in regular languagesGASCom 2010, 2010, Montreal, Canada
Communication dans un congrès
inria-00542683v1
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Using medians to generate consensus rankings for biological dataSSDBM 2011: Scientific and Statistical Database Management Conference, 2011, Portland, United States
Communication dans un congrès
inria-00584690v1
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Algorithmes pour l' étude de la structure secondaire des ARN et l'alignement de séquencesBio-informatique [q-bio.QM]. Université Paris Sud - Paris XI, 2012. Français. ⟨NNT : ⟩
Thèse
tel-00781416v1
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Optimisation problems for pairwise RNA sequence and structure comparison: a brief surveyTransactions on Computational Collective Intelligence, 2014, 13, pp.70-82. ⟨10.1007/978-3-642-54455-2_3⟩
Article dans une revue
hal-00759573v1
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Towards firm foundations for the rational design of RNA moleculesColloque de Bioinformatique Moléculaire (GdR BIM), Oct 2015, Paris, France
Communication dans un congrès
hal-01570180v1
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Bio-algorithmique des ARN : petite promenade aux interfacesEric Sopena. 1024 - Bulletin de la société informatique de France, 4, SIF, pp.23--53, 2014
Chapitre d'ouvrage
hal-01077506v3
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Evolution of genes neighborhood within reconciled phylogenies: an ensemble approachPoster de conférence hal-01216782v1 |
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Learning with bandit feedback in potential gamesNIPS '17: Proceedings of the 31st International Conference on Neural Information Processing Systems, Dec 2017, Long Beach, CA, United States
Communication dans un congrès
hal-01643352v1
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SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read map-pability.Bioinformatics, 2016, 32, pp.984-992. ⟨10.1093/bioinformatics/btv751⟩
Article dans une revue
hal-01253126v1
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Proceedings of the SeqBio 2015 workshop: String algorithms for bioinformaticsAlain Denise; Olivier Lespinet; Mireille Régnier. 2015
Ouvrages
hal-01264187v1
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GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies.PLoS ONE, 2015, 10 (8), pp.e0136444. ⟨10.1371/journal.pone.0136444⟩
Article dans une revue
hal-01201665v1
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Automatic characterization of emergent phenomena in complex systemsJournal of Biological Physics and Chemistry, 2010, 10, pp.16--23
Article dans une revue
hal-00644627v1
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ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data10th International Conference, Data Integration in the Life Sciences, Jul 2014, Lisbon, Portugal. pp.128 - 142, ⟨10.1007/978-3-319-08590-6_13⟩
Communication dans un congrès
hal-01091053v1
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ecceTERA: Comprehensive gene tree-species tree reconciliation using parsimonyBioinformatics, 2016, 32 (13), pp.2056-2058. ⟨10.1093/bioinformatics/btw105⟩
Article dans une revue
hal-01276903v1
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Taming reluctant random walks in the positive quadrantGASCOM - 10th conference on random generation of combinatorial structures - 2016, Jun 2016, Bastia, France. pp.99 -- 114, ⟨10.1016/j.endm.2017.05.008⟩
Communication dans un congrès
hal-01291164v1
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Counting, generating and sampling tree alignmentsALCOB - 3rd International Conference on Algorithms for Computational Biology - 2016, Jun 2016, Trujillo, Spain. pp.53--64, ⟨10.1007/978-3-319-38827-4_5⟩
Communication dans un congrès
hal-01154030v3
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Proceedings of the 1st workshop on Computational Methods for Structural RNAsJossinet, Fabrice; Ponty, Yann; Waldispühl, Jérôme. McGill University, pp.76, 2014, 978-2-9550187-0-5. ⟨10.15455/CMSR.2014.0000⟩
Ouvrages
hal-01071417v1
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Automated prediction of three-way junction topological families in RNA secondary structuresComputational Biology and Chemistry, 2012, 37, pp.1-5
Article dans une revue
hal-00641738v1
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An integrative approach for predicting the RNA secondary structure for the HIV–1 Gag UTR using probing dataJOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2017, Jul 2017, Lille, France. pp.102
Communication dans un congrès
hal-01534587v1
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A Combinatorial Framework for Designing (Pseudoknotted) RNA AlgorithmsWABI - 11th Workshop on Algorithms in Bioinformatics - 2011, 2011, Saarbrucken, Germany
Communication dans un congrès
inria-00601060v1
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Search, adapt, and reuse: the future of scientific workflowsSIGMOD record, 2011, ⟨10.1145/2034863.2034865⟩
Article dans une revue
inria-00638043v1
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