Dimension reduction adapted to paleogenomics
Séverine Liégeois
,
Olivier François
,
Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering , Sep 2018, Orsay, France
Poster de conférence
hal-01978650v1
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Combiner arbres phylogénétiques et visualisation d'ensembles
Jean-Baptiste Lamy
,
Flora Jay
Atelier Visualisation d'informations, interaction et fouille de données , Jan 2020, Bruxelles, Belgique
Communication dans un congrès
hal-02968296v1
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End-to-End Deep Learning Approach for Demographic History Inference
Théophile Sanchez
,
Guillaume Charpiat
,
Flora Jay
Human Evolution: Fossils, Ancient and Modern Genomes 2017 , Nov 2017, Hinxton, Cambridge, United Kingdom
Poster de conférence
hal-01823543v1
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Reconciling Qualitative, Abstract, and Scalable Modeling of Biological Networks
Loïc Paulevé
,
Juraj Kolčák
,
Thomas Chatain
,
Stefan Haar
Article dans une revue
hal-02518582v2
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Parameter Space Abstraction and Unfolding Semantics of Discrete Regulatory Networks
Juraj Kolčák
,
David Šafránek
,
Stefan Haar
,
Loïc Paulevé
Article dans une revue
hal-01734805v1
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Factor analysis of ancient population genomic samples
Olivier François
,
Flora Jay
Article dans une revue
hal-02942333v1
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A graph-based approach to classify A-minor motifs in RNA structures according to their structural context
Coline Gianfrotta
,
Vladimir Reinharz
,
Olivier Lespinet
,
Dominique Barth
,
Alain Denise
ISMB: Intelligent Systems for Molecular Biology , Jul 2020, Virtual conference (Covid), Canada
Poster de conférence
hal-04469616v1
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Computing EFMs consistent with equilibrium constants
Sabine Pérès
,
Philippe Dague
,
Mario Jolicœur
,
Stefan Schuster
Metabolic Pathway Analysis MPA 2017 , Jul 2017, Bozeman, United States
Communication dans un congrès
hal-01676892v1
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VersionClimber: version upgrades without tears
Christophe Pradal
,
Sarah Cohen-Boulakia
,
Patrick Valduriez
,
Dennis Shasha
Article dans une revue
hal-02262591v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)
Nicolas Levy
,
Aurélien Naldi
,
Céline Hernandez
,
Gautier Stoll
,
Denis Thieffry
,
et al.
Article dans une revue
hal-01809081v1
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Journées BIOSS-IA 2017
Loïc Paulevé
,
Philippe Dague
2017
Autre publication scientifique
hal-01666094v1
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Combining Refinement of Parametric Models with Goal-Oriented Reduction of Dynamics
Stefan Haar
,
Juraj Kolčák
,
Loïc Paulevé
VMCAI 2019 - 20th International Conference on Verification, Model Checking, and Abstract Interpretation , Jan 2019, Lisbon, Portugal. pp.555-576,
⟨10.1007/978-3-030-11245-5_26⟩
Communication dans un congrès
hal-01940174v1
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Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism
Matthieu Barba
,
Raphaël Dutoit
,
Christianne Legrain
,
Bernard Labedan
Article dans une revue
hal-01758866v1
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Temporal Reprogramming of Boolean Networks
Hugues Mandon
,
Stefan Haar
,
Loïc Paulevé
Communication dans un congrès
hal-01589251v1
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On the predictibility of A-minor motifs from their local contexts
Coline Gianfrotta
,
Vladimir Reinharz
,
Olivier Lespinet
,
Dominique Barth
,
Alain Denise
Article dans une revue
hal-03864666v1
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Inference of population genetic structure from temporal samples of DNA
Olivier François
,
Séverine Liégeois
,
Benjamin Demaille
,
Flora Jay
2019
Pré-publication, Document de travail
hal-02413974v1
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Analyzing Large Network Dynamics with Process Hitting
Loïc Paulevé
,
Courtney Chancellor
,
Maxime Folschette
,
Morgan Magnin
,
Olivier Roux
Luis Fariñas del Cerro; Katsumi Inoue. Logical Modeling of Biological Systems , Wiley, pp.125 - 166, 2014, 978-1-84821-680-8
Chapitre d'ouvrage
hal-01060490v1
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Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation
Théophile Sanchez
,
Jean Cury
,
Guillaume Charpiat
,
Flora Jay
Article dans une revue
hal-02942328v1
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Analyse statique des réseaux booléens
Loïc Paulevé
,
Adrien Richard
Emmanuel Jeandel; Laurent Vigneron.
Informatique Mathématique, Une photographie en 2018 ,
CNRS Éditions , pp.157-194, 2018, 978-2-271-11974-2
Chapitre d'ouvrage
hal-01753101v1
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Boolean Networks: Beyond Generalized Asynchronicity
Thomas Chatain
,
Stefan Haar
,
Loïc Paulevé
AUTOMATA 2018 - 24th IFIP WG 1.5 International Workshop on Cellular Automata and Discrete Complex Systems , Jun 2018, Ghent, Belgium. pp.29-42,
⟨10.1007/978-3-319-92675-9_3⟩
Communication dans un congrès
hal-01768359v2
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Creating Artificial Human Genomes Using Generative Models
Burak Yelmen
,
Aurelien Decelle
,
Linda Ongaro
,
Davide Marnetto
,
Francesco Montinaro
,
et al.
2019
Pré-publication, Document de travail
hal-02413942v1
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Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices
Alexis Courbet
,
Patrick Amar
,
François Fages
,
Eric Renard
,
Franck Molina
Article dans une revue
hal-01779791v1
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Gearing up to handle the mosaic nature of life in the quest for orthologs
Kristoffer Forslund
,
Cécile Pereira
,
Salvador Capella-Gutiérrez
,
Alan Sousa da Silva
,
Adrian M Altenhoff
,
et al.
Article dans une revue
hal-01758841v1
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Biomachines For Medical Diagnosis
Francisco Santos Schneider
,
Amar Patrick
,
Asma Bahri
,
Julien Espeut
,
Mellis Alali
,
et al.
Article dans une revue
hal-03059916v1
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SPI-DNA: End-to-end Deep Learning Approach for Demographic History Inference
Théophile Sanchez
,
Guillaume Charpiat
,
Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering , Sep 2017, Orsay, France
Communication dans un congrès
hal-01679385v1
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Fast Inference of Individual Admixture Coefficients Using Geographic Data
Kevin Caye
,
Flora Jay
,
Olivier J.J. Michel
,
Olivier François
Article dans une revue
hal-01676712v1
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data
Misbah Razzaq
,
Loïc Paulevé
,
Anne Siegel
,
Julio Saez-Rodriguez
,
Jérémie Bourdon
,
et al.
Article dans une revue
hal-01897020v1
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Unfolding of Parametric Boolean Networks
Juraj Kolčák
,
David Šafránek
,
Stefan Haar
,
Loïc Paulevé
7th International Workshop on Static Analysis and Systems Biology (SASB 2016) , Sep 2016, Edimbourg, United Kingdom. pp.67-90,
⟨10.1016/j.entcs.2018.03.009⟩
Communication dans un congrès
hal-01354109v2
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Aurélien Naldi
,
Céline Hernandez
,
Nicolas Levy
,
Gautier Stoll
,
Pedro Monteiro
,
et al.
Article dans une revue
hal-01794294v2
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Algorithms for the Sequential Reprogramming of Boolean Networks
Hugues Mandon
,
Cui Su
,
Jun Pang
,
Soumya Paul
,
Stefan Haar
,
et al.
Article dans une revue
hal-02113864v1
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