Recherche - INRIA - Institut National de Recherche en Informatique et en Automatique Accéder directement au contenu

Filtrer vos résultats

41 résultats
Page :
triés par
Image document

Models and methods for genome-resolved metagenomics

 Benjamin Churcheward
Computer Science [cs]. Nantes Université, 2022. English. ⟨NNT : ⟩
Thèse tel-03983215v1
Image document

Annotation d'interactions hôte-microbiote dans des articles scientifiques par similarité sémantique avec une ontologie

 Oumaima El Khettari , Solen Quiniou , Samuel Chaffron
18e Conférence en Recherche d'Information et Applications -- 16e Rencontres Jeunes Chercheurs en RI -- 30e Conférence sur le Traitement Automatique des Langues Naturelles -- 25e Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues, 2023, Paris, France. pp.21-26
Communication dans un congrès hal-04309357v1

Approximation algorithms for sorting by k-cuts on signed permutations

 Andre Rodrigues Oliveira , Alexsandro Oliveira Alexandrino , Géraldine Jean , Guillaume Fertin , Ulisses Dias , et al.
Journal of Combinatorial Optimization, 2022, 45 (6), ⟨10.1007/s10878-022-00937-z⟩
Article dans une revue hal-04416193v1
Image document

Decomposing Subcubic Graphs into Claws, Paths or Triangles

 Laurent Bulteau , Guillaume Fertin , Anthony Labarre , Romeo Rizzi , Irena Rusu
Journal of Graph Theory, 2021, 98 (4), pp.557-588. ⟨10.1002/jgt.22713⟩
Article dans une revue hal-03388424v1

Sorting Genomes by Prefix Double-Cut-and-Joins

 Guillaume Fertin , Géraldine Jean , Anthony Labarre
String Processing and Information Retrieval, 29th International Symposium, SPIRE 2022, Nov 2022, Concepcion, Chile. pp.178-190, ⟨10.1007/978-3-031-20643-6_13⟩
Communication dans un congrès hal-03958465v1
Image document

Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides

 Grégoire Prunier , Mehdi Cherkaoui , Albane Lysiak , Olivier Langella , Mélisande Blein-Nicolas , et al.
BMC Bioinformatics, 2023, 24 (1), pp.421. ⟨10.1186/s12859-023-05555-y⟩
Article dans une revue hal-04296170v1
Image document

Microbial community functioning during plant litter decomposition

 Simon Schroeter , Damien Eveillard , Samuel Chaffron , Johanna Zoppi , Bernd Kampe , et al.
Scientific Reports, 2022, 12 (1), pp.7451. ⟨10.1038/s41598-022-11485-1⟩
Article dans une revue hal-03781927v1

Towards modeling genome-scale knowledge in the global ocean

 Antoine Régimbeau , Olivier Aumont , Chris Bowler , Lionel Guidi , George Jackson , et al.
2023
Pré-publication, Document de travail hal-04316033v1
Image document

Priorities for ocean microbiome research

 Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas , et al.
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Article dans une revue hal-03781942v1

caspo: a toolbox for automated reasoning on the response of logical signaling networks families

 Santiago Videla , Julio Saez-Rodriguez , Carito Guziolowski , Anne Siegel
Bioinformatics, 2017, ⟨10.1093/bioinformatics/btw738⟩
Article dans une revue hal-01426880v1

Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions

 Gabriel Siqueira , Alexsandro Oliveira Alexandrino , Andre Rodrigues Oliveira , Géraldine Jean , Guillaume Fertin , et al.
International Symposium on Bioinformatics Research and Applications (ISBRA 2023), Oct 2023, Wrocław, Poland. pp.241-254, ⟨10.1007/978-981-99-7074-2_19⟩
Communication dans un congrès hal-04418179v1

SpecGlob: rapid and accurate alignment of mass spectra differing from their peptide models by several unknown modifications

 Albane Lysiak , Guillaume Fertin , Géraldine Jean , Dominique Tessier
2022
Pré-publication, Document de travail hal-03959826v1

Detection of multiple modifications in mass spectra without any a priori

 Albane Lysiak , Guillaume Fertin , Géraldine Jean , Dominique Tessier
69th ASMS Conference on Mass Spectrometry and Allied Topics, Oct 2021, Philadelphia (PA), United States
Poster de conférence hal-03959810v1

Community metabolic modeling of host-microbiota interactions through multi-objective optimization

 Anna Lambert , Marko Budinich , Maxime Mahé , Samuel Chaffron , Damien Eveillard
2023
Pré-publication, Document de travail hal-04316271v1
Image document

A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma

 Maxime Folschette , Vincent Legagneux , Arnaud Poret , Lokmane Chebouba , Carito Guziolowski , et al.
BMC Bioinformatics, 2020, 21 (1), pp.18. ⟨10.1186/s12859-019-3316-1⟩
Article dans une revue hal-02095930v4

Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean

 Ina Deutschmann , Erwan Delage , Caterina Giner , Marta Sebastián , Julie Poulain , et al.
Nature Communications, 2024, 15 (1), pp.126. ⟨10.1038/s41467-023-44550-y⟩
Article dans une revue hal-04407573v1

Sorting by k-Cuts on Signed Permutations

 Andre Rodrigues Oliveira , Alexsandro Oliveira Alexandrino , Géraldine Jean , Guillaume Fertin , Ulisses Dias , et al.
Comparative Genomics 19th International Conference, RECOMB-CG 2022, May 2022, La Jolla, United States. pp.189-204, ⟨10.1007/978-3-031-06220-9_11⟩
Communication dans un congrès hal-03959780v1
Image document

Scalable and exhaustive screening of metabolic functions carried out by microbial consortia

 Clémence Frioux , Enora Fremy , Camille Trottier , Anne Siegel
ECCB - 2018 - 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece. pp.i934-i943
Communication dans un congrès hal-01946860v1
Image document

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

 Sylvain Prigent , Clémence Frioux , Simon M Dittami , Sven Thiele , Abdelhalim Larhlimi , et al.
PLoS Computational Biology, 2017, 13 (1), pp.32. ⟨10.1371/journal.pcbi.1005276⟩
Article dans une revue hal-01449100v1
Image document

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

 Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont , et al.
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Article dans une revue hal-02399723v2
Image document

Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses

 François Thomas , Philippe Bordron , Damien Eveillard , Gurvan Michel
Frontiers in Microbiology, 2017, 8, pp.article 1808. ⟨10.3389/fmicb.2017.01808⟩
Article dans une revue hal-01613034v1
Image document

Building a Corpus for Biomedical Relation Extraction of Species Mentions

 Oumaima El Khettari , Solen Quiniou , Samuel Chaffron
The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, Jul 2023, Toronto, Canada. pp.248-254, ⟨10.18653/v1/2023.bionlp-1.21⟩
Communication dans un congrès hal-04309226v1
Image document

Inferring Boolean Networks from Single-Cell Human Embryo Datasets

 Mathieu Bolteau , Jérémie Bourdon , Laurent David , Carito Guziolowski
2023
Pré-publication, Document de travail hal-04206397v1

Plankton networks correlated to the biological carbon pump in the global ocean

 A.S. Benoiston , L. Bittner , Lionel Guidi , S. Chaffron , D. Eveillard , et al.
Journée analyse des réseau, GDR génomique environnementale, 2017, Nantes, France
Communication dans un congrès hal-04024048v1

PhotoEukStein opens doors to the metabolism of eukaryotic-algae

 Marie Burel , Antoine Régimbeau , Damien Eveillard , Eric Pelletier
ISME18, Aug 2022, Lausanne, Switzerland
Poster de conférence hal-04384915v1
Image document

Artificial Intelligence, Machine Learning and Modeling for Understanding the Oceans and Climate Change

 Nayat Sanchez-Pi , Luis Marti , André Abreu , Olivier Bernard , Colomban de Vargas , et al.
NeurIPS 2020 Workshop - Tackling Climate Change with Machine Learning, Dec 2020, Santiago / Virtual, Chile
Communication dans un congrès hal-03138712v1

Toward a better understanding of the plant microbiota

 Victoria Potdevin , Marie Chevallier , Ruben Garrido Oter , Anne Siegel , Stéphane Hacquard , et al.
4ème colloque de Génomique Environnementale, GDR Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès hal-01576743v1

Transposition Distance Considering Intergenic Regions for Unbalanced Genomes

 Alexsandro Oliveira Alexandrino , Andre Rodrigues Oliveira , Géraldine Jean , Guillaume Fertin , Ulisses Dias , et al.
Bioinformatics Research and Applications 18th International Symposium, ISBRA 2022, Nov 2022, Haifa, Israel. pp.100-113, ⟨10.1007/978-3-031-23198-8_10⟩
Communication dans un congrès hal-03958480v1

Scalable and exhaustive screening of metabolic functions carried out by microbial consortia

 Clémence Frioux , Enora Fremy , Camille Trottier , Anne Siegel
Bioinformatics, 2018, 34 (17), pp.i934 - i943. ⟨10.1093/bioinformatics/bty588⟩
Article dans une revue hal-01871600v1

Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information

 Alexsandro Oliveira Alexandrino , Andre Rodrigues Oliveira , Géraldine Jean , Guillaume Fertin , Ulisses Dias , et al.
Journal of Computational Biology, 2023, 30 (8), pp.861-876. ⟨10.1089/cmb.2023.0087⟩
Article dans une revue hal-04416210v1
Page :