Apport des ontologies de domaine pour l'extraction de connaissances à partir de données biomédicales
Gabin Personeni
Thèse
tel-01925461v1
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Modélisation 3D de complexes ARN-protéine par assemblage combinatoire de fragments structuraux
Antoine Moniot
Thèse
tel-04099698v1
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EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
David Ritchie
Communication dans un congrès
hal-01216743v1
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EROS-DOCK: Protein-Protein Docking Using Exhaustive Branch-and-Bound Rotational Search
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
Article dans une revue
hal-02269812v1
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Unsupervised extremely randomized trees
Kevin Dalleau
,
Miguel Couceiro
,
Malika Smaïl-Tabbone
PAKDD 2018 - The 22nd Pacific-Asia Conference on Knowledge Discovery and Data Mining , May 2018, Melbourne, Australia
Communication dans un congrès
hal-01667317v2
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Synthesis of Boolean networks from the structure and dynamics of reaction networks
Athénaïs Vaginay
Thèse
tel-04257373v1
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Analysis and Mining of Large Dynamic Graphs: case of graph clustering
Wissem Inoubli
Distributed, Parallel, and Cluster Computing [cs.DC]. Université de Tunis El Manar (Tunisie), 2021. English.
⟨NNT : ⟩
Thèse
tel-03428615v1
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Using aggregation functions on structured data: a use case in the FIGHT-HF project
Kevin Dalleau
,
Miguel Couceiro
,
Marie-Dominique Devignes
,
Chedy Raïssi
,
Malika Smaïl-Tabbone
International Symposium on Aggregation and Structures (ISAS 2016) , Jul 2016, Luxembourg, Luxembourg
Communication dans un congrès
hal-01399232v1
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study
Pierre Monnin
,
Emmanuel Bresso
,
Miguel Couceiro
,
Malika Smaïl-Tabbone
,
Amedeo Napoli
,
et al.
ALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets , Aug 2020, Nancy, France
Communication dans un congrès
hal-02913224v1
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An Overview of in Silico Methods for the Prediction of Ionizing Radiation Resistance in Bacteria
Manel Zoghlami
,
Sabeur Aridhi
,
Mondher Maddouri
,
Engelbert Mephu Nguifo
Tamar Reeve. Ionizing Radiation: Advances in Research and Applications , Nova science publishers, pp.241-256, 2018, Physics Research and Technology Series, 978-1-53613-539-8
Chapitre d'ouvrage
hal-01807944v1
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Un algorithme distribué pour le clustering de grands graphes
Wissem Inoubli
,
Sabeur Aridhi
,
Haithem Mezni
,
Mondher Maddouri
,
Engelbert Mephu Nguifo
20ème édition de la conférence francophone "Extraction et gestion des connaissances" , Jan 2020, Bruxelles, Belgique
Communication dans un congrès
hal-02540571v1
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Naphthyl and Coumarinyl Biarylpiperazine Derivatives as Highly Potent Human β-Secretase Inhibitors. Design, Synthesis, and Enzymatic BACE-1 and Cell Assays
Cédrik Garino
,
Taisuke Tomita
,
Nicolas Pietrancosta
,
Younes Laras
,
Roselyne Rosas
,
et al.
Article dans une revue
istex
hal-02351696v1
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Discovering associations between adverse drug events using pattern structures and ontologies
Gabin Personeni
,
Emmanuel Bresso
,
Marie-Dominique Devignes
,
Michel Dumontier
,
Malika Smaïl-Tabbone
,
et al.
Article dans une revue
hal-01576341v1
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Special issue on “Uncertainty in Cloud Computing: Concepts, Challenges and Current Solutions”
Allel Hadjali
,
Haithem Mezni
,
Sabeur Aridhi
,
Andrei Tchernykh
Article dans une revue
hal-03025894v1
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Long chain alkyphenol mixture promotes breast cancer initiation and progression through an ER$\alpha$36-mediated mechanism
Clémence Chamard-Jovenin
,
Amand Chesnel
,
Chloé Morel
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
et al.
2nd International Symposium of the Cancer Research Center of Lyon , Sep 2015, Lyon, France
Communication dans un congrès
hal-01320740v1
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Sex differences in circulating proteins in heart failure with preserved ejection fraction
Susan Stienen
,
Joao Pedro Ferreira
,
Masatake Kobayashi
,
Gregoire Preud’homme
,
Daniela Dobre
,
et al.
Article dans une revue
hal-02928742v1
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Naihui Zhou
,
Yuxiang Jiang
,
Timothy Bergquist
,
Alexandra Lee
,
Balint Kacsoh
,
et al.
Article dans une revue
hal-02393202v1
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A Distributed Framework for Large-Scale Time-Dependent Graph Analysis
Wissem Inoubli
,
Livia Almada
,
Ticiana L. Coelho da Silva
,
Gustavo Coutinho
,
Lucas Peres
,
et al.
ECML PKDD 2017 - TD-LSG 2017 : workshop Advances in Mining Large-Scale Time Dependent Graphs , Sep 2017, Skopje, Macedonia. pp.6
Communication dans un congrès
hal-01590675v2
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PDB-wide identification of biological assemblies from conserved quaternary structure geometry
Sucharita Dey
,
David Ritchie
,
Emmanuel D Levy
Article dans une revue
hal-01652359v1
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Whole Number Recursion Formulae for High Order Clebsch-Gordan Coupling Coefficients
David Ritchie
2018
Pré-publication, Document de travail
hal-01851097v1
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Calculating and scoring high quality multiple flexible protein structure alignments
David Ritchie
Article dans une revue
hal-01371083v1
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Associating Gene Ontology Terms with Pfam Protein Domains
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
David Ritchie
5th International Work-Conference on Bioinformatics and Biomedical Engineering - IWBBIO 2017 , Apr 2017, Granada, Spain. pp.127-138,
⟨10.1007/978-3-319-56154-7_13⟩
Communication dans un congrès
hal-01531204v1
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EROS-DOCK and EROS-DOCK MULTI-BODY Approach
Maria-Elisa Ruiz-Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
CAPRI evaluation meeting , Apr 2019, Hinxton, United Kingdom
Communication dans un congrès
hal-02394484v1
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Prédiction de défauts dans les arbres du parc végétal Grenoblois et préconisations pour les futures plantations
Yelen Per
,
Kevin Dalleau
,
Malika Smaïl-Tabbone
EGC 2017 - Extraction et Gestion des Connaissances , Jan 2017, Grenoble, France. pp.237-248
Communication dans un congrès
hal-01611504v1
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Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding
Md Kamrul Islam
,
Diego Amaya-Ramirez
,
Bernard Maigret
,
Marie-Dominique Devignes
,
Sabeur Aridhi
,
et al.
Article dans une revue
hal-04017432v1
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EROS: A Protein Docking Algorithm Using a Quaternion Pi-Ball Representation for Exhaustive and Accelerated Exploration of 3D Rotational Space
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
APIL 2018 - Journée d'automne de l'Ecole Doctorale IAEM-Lorraine , Nov 2018, Nancy, France
Poster de conférence
hal-01929546v1
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Contributions from the 2018 Literature on Bioinformatics and Translational Informatics
Malika Smail-Tabbone
,
Bastien Rance
Article dans une revue
hal-02413623v1
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Reduced structural flexibility of eplet amino acids in HLA proteins
Diego Amaya-Ramirez
,
Romain Lhotte
,
Magali Devriese
,
Constantin Hays
,
Jean-Luc Taupin
,
et al.
ECCB 2022 21st European Conference on Computational Biology Planetary Health and Biodiversity , Sep 2022, Barcelona, Spain
Poster de conférence
hal-03924018v1
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Experiences with a training DSW knowledge model for early-stage researchers
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
Hrishikesh Dhondge
,
Roswitha Dolcemascolo
,
Jose Gavaldá-García
,
et al.
Article dans une revue
hal-04234402v1
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Identification of new putative inhibitors of Mycobacterium tuberculosis 3-dehydroshikimate dehydratase from a combination of ligand- and structure-based and deep learning in silico approaches
João Vítor Perez De Souza
,
Erika Seki Kioshima
,
Letícia Sayuri Murase
,
Diego de Souza Lima
,
Flavio Augusto Vicente Seixas
,
et al.
Article dans une revue
hal-03591628v1
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