Finding Optimal Discretization Orders for Molecular Distance Geometry by Answer Set Programming
Douglas S. Gonçalves
,
Jacques Nicolas
,
Antonio Mucherino
,
Carlile Lavor
S. Fidanova. Studies in Computational Intelligence , 610, Springer, pp.1-15, 2015, Recent Advances in Computational Optimization
Chapitre d'ouvrage
hal-01196714v1
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An application suite based on the IFB Container as a Service platform
François Moreews
,
Olivier Sallou
,
Olivier Collin
ECCB 2016 (Elixir Talks) , ISCB, Sep 2016, Den Haag, Netherlands
Communication dans un congrès
hal-01394295v1
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A bottom-up efficient algorithm learning substitutable languages from positive examples
François Coste
,
Gaelle Garet
,
Jacques Nicolas
ICGI (International Conference on Grammatical Inference) , Sep 2014, Kyoto, Japan. pp.49--63
Communication dans un congrès
hal-01080249v1
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Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species
Arnaud Belcour
,
Clémence Frioux
,
Méziane Aite
,
Anthony Bretaudeau
,
Falk Hildebrand
,
et al.
JOBIM 2020 - Journées Ouvertes de Biologie, Informatique et Mathématique , Jun 2020, Montpellier / Virtual, France.
⟨10.1101/803056⟩
Poster de conférence
hal-03151934v1
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Boolean Network Identification from Perturbation Time Series Data combining Dynamics Abstraction and Logic Programming
Max Ostrowski
,
Loïc Paulevé
,
Torsten Schaub
,
Anne Siegel
,
Carito Guziolowski
Article dans une revue
hal-01354075v1
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Geometric analysis of pathways dynamics: application to versatility of TGF-β receptors
Satya Swarup Samal
,
Aurélien Naldi
,
Dima Grigoriev
,
Andreas Weber
,
Nathalie Théret
,
et al.
Article dans une revue
hal-01379033v1
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Multivariate Normal Approximation for the Stochastic Simulation Algorithm: limit theorem and applications
Vincent Picard
,
Anne Siegel
,
Jérémie Bourdon
SASB - 5th International Workshop on Static Analysis and Systems Biology , 2014, Munchen, Germany
Communication dans un congrès
hal-01079768v1
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Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs
Oumarou Abdou-Arbi
,
Sophie Lemosquet
,
Jaap J. van Milgen
,
Anne Siegel
,
Jérémie Bourdon
Article dans une revue
hal-00947219v1
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Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming
Carito Guziolowski
,
Santiago Videla
,
Federica Eduati
,
Sven Thiele
,
Thomas Cokelaer
,
et al.
Article dans une revue
hal-00853704v1
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Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Anna Niarakis
,
Dagmar Waltemath
,
James Glazier
,
Falk Schreiber
,
Sarah Keating
,
et al.
Article dans une revue
hal-03690604v1
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Detection of mutated primers and impact on targeted metagenomics results
Aymeric Antoine-Lorquin
,
Frédéric Mahé
,
Micah Dunthorn
,
Catherine Belleannée
RCAM'16 "Recent Computational Advances in Metagenomics" , Sep 2016, The Hague, Netherlands
Communication dans un congrès
hal-01576304v1
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CARNAC-LR: De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets
Camille Marchet
,
Lolita Lecompte
,
Corinne da Silva
,
Corinne Cruaud
,
Jean-Marc Aury
,
et al.
RECOMB-seq 2018 - Eighth RECOMB Satellite Workshop on Massively Parallel Sequencing , Apr 2018, Paris, France. pp.1-2
Poster de conférence
hal-01929963v1
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Toward a better understanding of the plant microbiota
Victoria Potdevin
,
Marie Chevallier
,
Ruben Garrido Oter
,
Anne Siegel
,
Stéphane Hacquard
,
et al.
4ème colloque de Génomique Environnementale , GDR Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès
hal-01576743v1
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Modeling cell signaling pathways with discrete dynamical systems : Application to Transforming Growth Factor β (TGFβ) signaling
Geoffroy Andrieux
,
Michel Le Borgne
,
Nathalie Theret
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) , Jul 2012, Rennes, France
Communication dans un congrès
hal-00760183v1
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An integrative modeling framework reveals plasticity of TGF-β signaling.
Geoffroy Andrieux
,
Michel Le Borgne
,
Nathalie Théret
Article dans une revue
inserm-00978313v1
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Intégration de données de phénotypiques, environnementales et de biodiversité à l'aide des technologies du Web Sémantique
Olivier Dameron
,
Yael Tirlet
,
Matéo Boudet
,
Fabrice Legeai
SYSINFO-INRAe 2022 - Journées INRAE systèmes d'information pour les données agro-environnementales , Nov 2022, Clermont-Ferrand, France
Communication dans un congrès
hal-03893738v1
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PEPS: a platform for supporting studies in pharmaco-epidemiology using medico-administrative databases
Frédéric Balusson
,
Marie-Anne Botrel
,
Olivier Dameron
,
Yann Dauxais
,
Erwan Drezen
,
et al.
International Congress on e-Health Research , Oct 2016, Paris, France
Communication dans un congrès
hal-01380939v1
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Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases
Marc Melkonian
,
Camille Juigné
,
Olivier Dameron
,
Gwenaël Rabut
,
Emmanuelle Becker
Article dans une revue
hal-03522989v1
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Inductive Learning from State Transitions over Continuous Domains
Tony Ribeiro
,
Sophie Tourret
,
Maxime Folschette
,
Morgan Magnin
,
Domenico Borzacchiello
,
et al.
Chapitre d'ouvrage
hal-01655644v3
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Constructing xenobiotic maps of metabolism to predict enzymes catalyzing metabolites capable of binding to DNA
Mael Conan
,
Nathalie Theret
,
Sophie Langouet
,
Anne Siegel
Article dans une revue
inserm-03355908v1
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Identification of causal signature using omics data integration and network reasoning-based analysis
Méline Wery
,
Emmanuelle Becker
,
Franck Auge
,
Charles Bettembourg
,
Olivier Dameron
,
et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2019, Nantes, France. pp.1
Poster de conférence
hal-02193860v1
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Identification de signature causale pathologie par intégration de données multi-omiques
Méline Wery
Thèse
tel-03213016v2
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Analysis and integration of heterogeneous large-scale genomics data : application to B cell differentiation and follicular lymphoma non coding mutations
Marine Louarn
Thèse
tel-03244465v1
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Integrative models for TGF-$\beta$ signaling and extracellular matrix
Nathalie Theret
,
Jérôme Feret
,
Arran Hodgkinson
,
Pierre Boutillier
,
Pierre Vignet
,
et al.
Chapitre d'ouvrage
hal-02458073v1
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PPalign: optimal alignment of Potts models representing proteins with direct coupling information
Hugo Talibart
,
François Coste
,
Mathilde Carpentier
ISMB 2022 - 30th Conference on Intelligent Systems for Molecular Biology , Jul 2022, Madison, United States. pp.1-1
Poster de conférence
hal-03926272v1
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Learning canonical Potts models
Pablo Espana Gutierrez
Computer Science [cs]. 2023
Mémoire d'étudiant
hal-04388795v1
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Interoperable infrastructure and implementation of a health data model for remote monitoring of chronic diseases with comorbidities
Philippe Finet
,
Bernard Gibaud
,
Olivier Dameron
,
Régine Le Bouquin Jeannes
Journées d'Etude sur la TéléSANté, 6ème edition , Pôle Capteurs, Université d'Orléans, May 2017, Bourges, France
Communication dans un congrès
hal-01565009v1
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Faster SPARQL Federated Queries
Antoine Abel
Bioinformatics [q-bio.QM]. 2019
Mémoire d'étudiant
hal-02269417v1
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AskOmics: a user-friendly interface to Semantic Web technologies for integrating local datasets with reference resources
Xavier Garnier
,
Anthony Bretaudeau
,
Fabrice Legeai
,
Anne Siegel
,
Olivier Dameron
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2019, Nantes, France. pp.1
Communication dans un congrès
hal-02401750v1
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Using residues coevolution to search for protein homologs through alignment of Potts models
Hugo Talibart
,
François Coste
CECAM 2019 - workshop on Co-evolutionary methods for the prediction and design of protein structure and interactions , CECAM-HQ-EPFL, Jun 2019, Lausanne, Switzerland. pp.1-2
Communication dans un congrès
hal-02402646v1
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